Publications

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Scaling to 150K Cores: Recent Algorithm and Performance Engineering Developments Enabling XGC1 to Run at Scale, Adams, M. F., Ku S. - H., Worley P. H., D'azevedo E. F., Cummings J. C., and Chang C. - S. , Journal of Physics: Conference Series, Volume 180, (2009)
An Overview of the BlueGene/L Supercomputer, Adiga, NR, Almasi G., Almasi GS, Barik R., Beece D., Bellofatto R., Bhanot G., Bickford R., Blumrich M., Bright AA, et al. , SC 2002, Baltimore, MD USA, (2002)
Evaluation of the SGI Altix 3700 at Oak Ridge National Laboratory, Agarwal, PK, Bauer D., Chandramohan P., Dunigan T., Fann G., Jaeger F., Kora G., Meunier V., Samatova N. F., Studham Scott R., et al. , (2004)
Cray X1 Evaluation Status Report, Agarwal, P. A., Alexander R. A., Apra E., Balay S., Bland A. S., Colgan J., D'azevedo E. F., Dongarra J., Drake J. B., Dunigan T. H., et al. , 46th Cray User Group Conference, Knoxville, TN, (2004)
Scientific Discovery at the Exascale, a Report from the DOE ASCR 2011 Workshop on Exascale Data Management, Analysis, and Visualization, Ahern, Sean, Shoshani Arie, Ma Kwan-Liu, Choudhary Alok, Critchlow Terence, Klasky Scott, Pascucci Valerio, Ahrens Jim, Bethel Wes E., Childs Hank, et al. , (2011)
MapReduce with Communication Overlap (MaRCO), Ahmad, Faraz, Lee Seyong, Thottethodi Mithuna, and VijayKumar T. N. , Journal of Parallel and Distributed Computing, (2012)
Scalable Analysis Techniques for Microprocessor Performance Counter Metrics, Ahn, Dong H., and Vetter Jeffrey S. , SC 2002, Baltimore, MD USA, (2002)
Sparse Matrix-Vector Multiplication Kernel on a Reconfigurable Computer, Akella, Sreesa, Smith Melissa, Mills Richard, Alam Sadaf, Barrett Richard, and Vetter Jeffrey S. , Workshop on High Performance Embedded Computing (HPEC), MIT Lincoln Laboratory, (2005)
Characterizing Applications on the MTA2 Multithreading Architecture, Alam, S. R., Barrett Richard, McCurdy Collin, Roth Philip C., and Vetter Jeffrey S. , 48th Cray User Group meeting (CUG 2006), Lugano, Switzerland, (2006)
Hierarchical Model Validation of Symbolic Performance Models of Scientific Kernels (Distinguished Paper), Alam, S. R., and Vetter Jeffrey S. , Euro-Par, Dresden, (2006)
Using FPGA Devices to Accelerate Biomolecular Simulations, Alam, S. R., Agarwal Pratul K., Smith Melissa C., Vetter Jeffrey S., and Caliga David , IEEE Computer, Volume 40, Issue 2, p.66-73, (2007)
An Evaluation of the Oak Ridge National Laboratory Cray XT3, Alam, Sadaf R., Barrett Richard F., Fahey Mark R., Kuehn Jeffery A., Bronson Messer O. E., Mills Richard T., Roth Philip C., Vetter Jeffrey S., and Worley P. H. , International Journal of High Performance Computing Applications, February 1, 2008, Volume 22, Issue 1, p.52-80, (2008)
Evaluation of the Cray XT3 at ORNL: A Status Report, Alam, Sadaf R., Barrett Richard, Dunigan Tom, Fahey Mark, Messer Bronson, Mills Richard, Roth Philip C., Vetter Jeffrey S., and Worley P. H. , 48th Cray User Group meeting (CUG 2006), Lugano, Switzerland, (2006)
An Application Specific Memory Characterization Technique for Co-processor Accelerators, Alam, S. R., Smith M. C., and Vetter Jeffrey S. , IEEE 18th International Conference on Application-specific Systems, Architectures and Processors, (2007)
A Framework to Develop Symbolic Performance Models of Parallel Applications, Alam, S. R., and Vetter Jeffrey S. , 5th International Workshop on Performance Modeling, Evaluation, and Optimization of Parallel and Distributed Systems (PMEO-PDS 2006), Rhodes Island, Greece, (2006)
Cray XT4: An Early Evaluation for Petascale Scientific Simulation, Alam, Sadaf R., Barrett R. F., Fahey M. R., Kuehn J. A., Larkin J. M., Sankaran R., and Worley P. H. , Proceedings of the ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC07), November, Reno, NV, (2007)
Impact of Multicores on Large-scale Molecular Dynamics Simulations, Alam, S. R., Agarwal Pratul, Ong H., Hampton S., and Vetter Jeffrey S. , IEEE International Workshop on High Performance Computational Biology (HiCOMB), in conjunction with IPDPS, p.1-7, (2008)
Performance Characterization of Molecular Dynamics Techniques for Biomolecular Simulations, Alam, S. R., Agarwal Pratul, Geist Al, and Vetter Jeffrey S. , ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (PPOPP), New York City, (2006)
Balancing Productivity and Performance on the Cell Broadband Engine, Alam, S. R., Meredith Jeremy S., and Vetter Jeffrey S. , IEEE Annual International Conference on Cluster Computing, Houston, (2007)
The Cray XT4 Quad-core: A First Look, Alam, Sadaf R., Barrett R. F., Eisenbach M., Fahey M. R., Hartman-Baker R., Kuehn J. A., Poole S., Sankaran R., and Worley P. H. , Proceedings of the 50th Cray User Group Conference, May, Helsinki, Finland, (2008)
Symbolic Performance Modeling of HPCS Applications, Alam, S. R., Bhatia Nikhil, and Vetter Jeffrey S. , Cyberinfrastructure Technology Watch, Volume 2, Issue 4B, (2006)
Early Evaluation of IBM BlueGene/P, Alam, Sadaf R., Barrett Richard, Bast Michael, Fahey Mark R., Kuehn Jeffrey, McCurdy Collin, Rogers James, Roth Philip C., Sankaran Ramanan, Vetter Jeffrey S., et al. , SC08: International Conference High Performance Computing, Networking, Storage, and Analysis, Austin, TX, (2008)
Sensitivity Analysis of Biomolecular Simulations using Symbolic Models, Alam, S. R., Bhatia Nikhil, and Vetter Jeffrey S. , 7th International Conf. on BioInformatics & BioEngineering, Boston, (2007)
Characterization of Scientific Workloads on Systems with Multi-Core Processors, Alam, S. R., Barrett Richard F., Kuehn Jeffery A., Roth Philip C., and Vetter Jeffrey S. , IEEE International Symposium on Workload Characterization (IISWC), San Jose, California, (2006)
Performance and Scalability Analysis of Cray X1 Loop Vectorization and Multistreaming, Alam, S., and Vetter Jeffrey S. , International Conference on Computational Science 2005 (ICCS 2005), Atlanta, (2005)

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