Publications

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Performance Modeling, Metrics and Specifications: Report of High End Computing Revitalization Task Force (HECRTF) Working Group Six, Ashby, S., Bailey D. H., Blackmon M., Bohrer P., Cameron K., DeTar C., Dongarra J., Dwoyer D., Freeman P., Gheith A., et al. , (2003)
On the Path to Exascale, Alvin, Kenneth F., Barrett Brian W., Brightwell Ronald B., Dosanjh Sudip S., Geist Al, Hemmert Scott K., Heroux Michael A., Kothe Doug, Murphy Richard C., Nichols Jeff, et al. , International Journal of Distributed Systems and Technologies (IJDST), Volume 1, Issue 2, p.1-22, (2010)
New algorithm to enable 400+ TFlop/s sustained performance in simulations of disorder effects in high-Tc superconductors, Alvarez, G., Summers M. S., Maxwell D. E., Eisenbach M., Meredith Jeremy S., Larkin J. M., Levesque J., Maier Thomas A., Kent P. R. C., and D'Azevedo E. F. , International Conference for High Performance Computing, Networking, Storage and Analysis (SC 2008), p.61, (2008)
Performance characteristics of biomolecular simulations on high-end systems with multi-core processors, Alam, S. R., Agarwal PK, and Vetter Jeffrey S. , Parallel Computing, Volume 34, Issue 11, p.640-651, (2008)
Using FPGA Devices to Accelerate Biomolecular Simulations, Alam, S. R., Agarwal Pratul K., Smith Melissa C., Vetter Jeffrey S., and Caliga David , IEEE Computer, Volume 40, Issue 2, p.66-73, (2007)
Performance and Scalability Analysis of Cray X1 Loop Vectorization and Multistreaming, Alam, S., and Vetter Jeffrey S. , International Conference on Computational Science 2005 (ICCS 2005), Atlanta, (2005)
Characterization of Scientific Workloads on Systems with Multi-Core Processors, Alam, S. R., Barrett Richard F., Kuehn Jeffery A., Roth Philip C., and Vetter Jeffrey S. , IEEE International Symposium on Workload Characterization (IISWC), San Jose, California, (2006)
An Application Specific Memory Characterization Technique for Co-processor Accelerators, Alam, S. R., Smith M. C., and Vetter Jeffrey S. , IEEE 18th International Conference on Application-specific Systems, Architectures and Processors, (2007)
The Cray XT4 Quad-core: A First Look, Alam, Sadaf R., Barrett R. F., Eisenbach M., Fahey M. R., Hartman-Baker R., Kuehn J. A., Poole S., Sankaran R., and Worley P. H. , Proceedings of the 50th Cray User Group Conference, May, Helsinki, Finland, (2008)
An Analysis of System Balance Requirements for Scientific Applications, Alam, S. R., and Vetter Jeffrey S. , 35th International Conference on Parallel Processing (ICPP), Columbus, (2006)
An Evaluation of the Oak Ridge National Laboratory Cray XT3, Alam, Sadaf R., Barrett Richard F., Fahey Mark R., Kuehn Jeffery A., Bronson Messer O. E., Mills Richard T., Roth Philip C., Vetter Jeffrey S., and Worley P. H. , International Journal of High Performance Computing Applications, February 1, 2008, Volume 22, Issue 1, p.52-80, (2008)
Characterizing Applications on the MTA2 Multithreading Architecture, Alam, S. R., Barrett Richard, McCurdy Collin, Roth Philip C., and Vetter Jeffrey S. , 48th Cray User Group meeting (CUG 2006), Lugano, Switzerland, (2006)
Balancing Productivity and Performance on the Cell Broadband Engine, Alam, S. R., Meredith Jeremy S., and Vetter Jeffrey S. , IEEE Annual International Conference on Cluster Computing, Houston, (2007)
Cray XT4: An Early Evaluation for Petascale Scientific Simulation, Alam, Sadaf R., Barrett R. F., Fahey M. R., Kuehn J. A., Larkin J. M., Sankaran R., and Worley P. H. , Proceedings of the ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC07), November, Reno, NV, (2007)
Hierarchical Model Validation of Symbolic Performance Models of Scientific Kernels (Distinguished Paper), Alam, S. R., and Vetter Jeffrey S. , Euro-Par, Dresden, (2006)
Impact of Multicores on Large-scale Molecular Dynamics Simulations, Alam, S. R., Agarwal Pratul, Ong H., Hampton S., and Vetter Jeffrey S. , IEEE International Workshop on High Performance Computational Biology (HiCOMB), in conjunction with IPDPS, p.1-7, (2008)
Evaluation of the Cray XT3 at ORNL: A Status Report, Alam, Sadaf R., Barrett Richard, Dunigan Tom, Fahey Mark, Messer Bronson, Mills Richard, Roth Philip C., Vetter Jeffrey S., and Worley P. H. , 48th Cray User Group meeting (CUG 2006), Lugano, Switzerland, (2006)
Sensitivity Analysis of Biomolecular Simulations using Symbolic Models, Alam, S. R., Bhatia Nikhil, and Vetter Jeffrey S. , 7th International Conf. on BioInformatics & BioEngineering, Boston, (2007)
Early Evaluation of IBM BlueGene/P, Alam, S. R., Barrett R. F., Fahey M. R., and Kuehn J. A. , Proceedings of the ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC08), November, Los Alamitos, CA, (2008)
A Framework to Develop Symbolic Performance Models of Parallel Applications, Alam, S. R., and Vetter Jeffrey S. , 5th International Workshop on Performance Modeling, Evaluation, and Optimization of Parallel and Distributed Systems (PMEO-PDS 2006), Rhodes Island, Greece, (2006)
Early Evaluation of IBM BlueGene/P, Alam, Sadaf R., Barrett Richard, Bast Michael, Fahey Mark R., Kuehn Jeffrey, McCurdy Collin, Rogers James, Roth Philip C., Sankaran Ramanan, Vetter Jeffrey S., et al. , SC08: International Conference High Performance Computing, Networking, Storage, and Analysis, Austin, TX, (2008)
Performance Characterization of Molecular Dynamics Techniques for Biomolecular Simulations, Alam, S. R., Agarwal Pratul, Geist Al, and Vetter Jeffrey S. , ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (PPOPP), New York City, (2006)
An Exploration of Performance Attributes for Symbolic Modeling of Emerging Processing Devices, Alam, S. R., Bhatia Nikhil, and Vetter Jeffrey S. , 3rd International High Performance Computation Conference (HPCC), Volume 4782, (2007)
Symbolic Performance Modeling of HPCS Applications, Alam, S. R., Bhatia Nikhil, and Vetter Jeffrey S. , Cyberinfrastructure Technology Watch, Volume 2, Issue 4B, (2006)
Sparse Matrix-Vector Multiplication Kernel on a Reconfigurable Computer, Akella, Sreesa, Smith Melissa, Mills Richard, Alam Sadaf, Barrett Richard, and Vetter Jeffrey S. , Workshop on High Performance Embedded Computing (HPEC), MIT Lincoln Laboratory, (2005)

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